Stem-loop ath-MIR399e

Accession

MI0001024

Description

Arabidopsis thaliana ath-MIR399e precursor miRNA

Literature search

35 open access papers mention ath-MIR399e
(174 sentences)

Sequence

gaaagcauuacagggcgaauccucuauuggcaguggaaguugaugacccuuauauguuauuuucucaucauuuuccucUGCCAAAGGAGAUUUGCCUCGcaaugcuuca
(((.(((((.(.(((((((((.(((.(((((((.(((((.((((((..................)))))).))))).))))))).)))))))))))).).)))))))).

Structure

-   a     a a         c   a       u     u      cccuuaua 
 gaa gcauu c gggcgaauc ucu uuggcag ggaag ugauga        u
 ||| ||||| | ||||||||| ||| ||||||| ||||| ||||||         
 cuu cguaa G UCCGUUUAG AGG AACCGUc ccuuu acuacu        g
a   -     c C         -   A       u     u      cuuuuauu 

Annotation confidence Low

Comments

This sequence belongs to the miR399 family of miRNAs, which are predicted to target mRNAs coding for a phosphatase transporter [1].

Genome context

chr2: 14443504-14443612 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ath-MIR399e

Mature ath-miR399e

• Accession: MIMAT0000955
• Description: Arabidopsis thaliana ath-miR399e mature miRNA
• Sequence: 79 - UGCCAAAGGAGAUUUGCCUCG - 99
• Evidence: experimental ; PCR [1], MPSS [2], Illumina [3]

References

1. PubMed ID: 16954541
   MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
   "Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC"
   "Genome Res (2006) 16:1276-1288


2. PubMed ID: 19815687
   Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
   "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
   "J Exp Bot (2010) 61:165-177


3. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799