Accession
MI0001022
Description
Arabidopsis thaliana
ath-MIR399c precursor miRNA
Literature search
34 open access papers mention ath-MIR399c
(175 sentences)
(175 sentences)
Sequence
ggagcaguaauaGGGCAUCUUUCUAUUGGCAGGcgacuuggcuauuuguaucuuuuguguucuugacuauuggcuaugucacuUGCCAAAGGAGAGUUGCCCUGucacugcuuc
((((((((.((((((((.((((((.((((((((.(((.((((((...((................))...)))))).))).)))))))).)))))).)))))))).))))))))
((((((((.((((((((.((((((.((((((((.(((.((((((...((................))...)))))).))).)))))))).)))))).)))))))).))))))))
Structure
a U A c u uuu aucuuuu
ggagcagu auaGGGCA CUUUCU UUGGCAGG gac uggcua gu g
|||||||| |||||||| |||||| |||||||| ||| |||||| ||
cuucguca uGUCCCGU GAGAGG AACCGUuc cug aucggu ca u
c U A a u uau guucuug
Annotation confidence
Low
Do you think this miRNA is real?
Comments
This sequence belongs to the miR399 family of miRNAs, which are predicted to target mRNAs coding for a phosphatase transporter [1].
Genome context
chr5: 24962485-24962598 [+]
Database links
Mature ath-miR399c-3p
| Accession | MIMAT0000953 |
| Description | Arabidopsis thaliana ath-miR399c-3p mature miRNA |
| Sequence | 84 - UGCCAAAGGAGAGUUGCCCUG - 104 |
| Evidence |
experimental
PCR [1], cloned [2], 5'RACE [3], 454 [4-5], MPSS [4], Illumina [6] |
Mature ath-miR399c-5p
| Accession | MIMAT0031913 |
| Description | Arabidopsis thaliana ath-miR399c-5p mature miRNA |
| Sequence | 13 - GGGCAUCUUUCUAUUGGCAGG - 33 |
| Evidence | not_experimental |
References
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