Accession
MI0001020
Description
Arabidopsis thaliana
ath-MIR399a precursor miRNA
Literature search
36 open access papers mention ath-MIR399a
(197 sentences)
(197 sentences)
Sequence
aaaugcauuacaggguaagaucucuauuggcaggaaaccauuacuuagaucuuugcaucucuuuaugcauugcuuuuaauuagugaguuaucUGCCAAAGGAGAUUUGCCCUGuaauucuucu
......(((((((((((.(((((((.((((((((.((((((((.(((((.(..(((((......)))))..)..))))).))))).))).)))))))).))))))))))))))))))......
......(((((((((((.(((((((.((((((((.((((((((.(((((.(..(((((......)))))..)..))))).))))).))).)))))))).))))))))))))))))))......
Structure
aaaugc a a a - c -u uu cu
auuacagggua gaucucu uuggcagg aac cauua uuaga c ugcau c
||||||||||| ||||||| |||||||| ||| ||||| ||||| | |||||
uaauGUCCCGU UUAGAGG AACCGUcu uug gugau aauuu g acgua u
ucuucu - A a a u uc uu uu
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
This sequence belongs to the miR399 family of miRNAs, which are predicted to target mRNAs coding for a phosphatase transporter [1].
Genome context
chr1: 10227073-10227195 [+]
Database links
Mature ath-miR399a
| Accession | MIMAT0000951 |
| Description | Arabidopsis thaliana ath-miR399a mature miRNA |
| Sequence | 93 - UGCCAAAGGAGAUUUGCCCUG - 113 |
| Evidence |
experimental
PCR [1], 454 [2-3], MPSS [2], Illumina [4] |
References
|
