Stem-loop ath-MIR171c

Accession

MI0000990

Description

Arabidopsis thaliana ath-MIR171c precursor miRNA

Literature search

25 open access papers mention ath-MIR171c
(112 sentences)

Sequence

ugagcgcacuaucggacaucaaauacgAGAUAUUGGUGCGGUUCAAUCagaaaaccguacucuuuuguuuuaaagaucgguuuauuugaUUGAGCCGUGCCAAUAUCACGcguuua
(((((((.....((...........)).(((((((((((((((((((((((((((((...(((((......))))).)))))).)))))))))))))))))))))))..)))))))

Structure

       acuaucggacaucaaauacgA                       -      uac     ug 
ugagcgc                     GAUAUUGGUGCGGUUCAAUCaga aaaccg   ucuuu  u
|||||||                     ||||||||||||||||||||||| ||||||   |||||   
auuugcG                     CUAUAACCGUGCCGAGUUaguuu uuuggc   agaaa  u
       -------------------CA                       a      --u     uu 

Annotation confidence Not enough data

Comments

This sequence is a predicted paralogue of the previously identified miR171 family [1], later experimentally verified [2,3]. It is predicted to target mRNAs coding for SCARECROW-like transcription factors.

Genome context

chr1: 22930089-22930204 [-]

Mature ath-miR171c-3p

• Accession: MIMAT0000921
• Description: Arabidopsis thaliana ath-miR171c-3p mature miRNA
• Sequence: 90 - UUGAGCCGUGCCAAUAUCACG - 110
• Evidence: experimental ; cloned [2-3], Northern [2], 5'RACE [3], 454 [4-5], MPSS [4]

Mature ath-miR171c-5p

• Accession: MIMAT0031900
• Description: Arabidopsis thaliana ath-miR171c-5p mature miRNA
• Sequence: 28 - AGAUAUUGGUGCGGUUCAAUC - 48
• Evidence: not_experimental

References

1. PubMed ID: 16040653
   Expression of Arabidopsis MIRNA genes
   "Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC"
   "Plant Physiol (2005) 138:2145-2154


2. PubMed ID: 16954541
   MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
   "Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC"
   "Genome Res (2006) 16:1276-1288


3. PubMed ID: 17182867
   A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
   "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
   "Genes Dev (2006) 20:3407-3425


4. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799


5. PubMed ID: 15258262
   Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis
   "Sunkar R, Zhu JK"
   "Plant Cell (2004) 16:2001-2019