Accession
MI0000979
Description
Arabidopsis thaliana
ath-MIR169e precursor miRNA
Literature search
34 open access papers mention ath-MIR169e
(156 sentences)
(156 sentences)
Sequence
ugaugaugaugaugagucacuaauuaauuguaucauagagucuugcauggaaaaauagaaaaugagauUGAGCCAAGGAUGACUUGCCGauuuucucaacgaaucuuacugauuaugguauccggcaaguugacuuuggcucuguuuccuucccuucuuuucgaugucaaacucuagauaccuaaccacauaucauauauaucaucaucauucauca
(((((((((((((((..............(((((.((((((.((((((.(((((..((..((.(((((.(((((((((..(((((((((..(...(((...((((.....)))).))).)..)))))))))..))))))))).))))).))..))..))))).))).))))))))))))))........((((...)))).))))))))).))))))
(((((((((((((((..............(((((.((((((.((((((.(((((..((..((.(((((.(((((((((..(((((((((..(...(((...((((.....)))).))).)..)))))))))..))))))))).))))).))..))..))))).))).))))))))))))))........((((...)))).))))))))).))))))
Structure
- ------gucacuaauuaauu a c - g au aa u U AU au uuc acg u
ugauga ugaugauga guauc uagagu uug cau gaaaa ag aa gagau GAGCCAAGG GACUUGCCG u uca aauc u
|||||| ||||||||| ||||| |||||| ||| ||| ||||| || || ||||| ||||||||| ||||||||| | ||| |||| a
acuacu acuacuacu cauag aucuca aac gua cuuuu uc uu cuuug cucgguuuc uugaacggc a ggu uuag c
u auauauacuauacaccaauc - - u g cu cc c u ag cu --u --a u
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
This sequence is a predicted paralogue of the previously identified miR169 family [1], later experimentally verified [2]. It is predicted to target mRNAs coding for the CCAAT Binding Factor (CBF) and HAP2-like transcription factors.
Genome context
chr1: 20041518-20041734 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ath-MIR169e
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ath-miR169e
| Accession | MIMAT0000909 |
| Description | Arabidopsis thaliana ath-miR169e mature miRNA |
| Sequence | 69 - UGAGCCAAGGAUGACUUGCCG - 89 |
| Evidence |
experimental
cloned [2], 454 [3-4], MPSS [3], Illumina [5] |
References
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