miRBase entry: hsa-mir-330

Stem-loop hsa-mir-330


Accession
MI0000803
Symbol
HGNC: MIR330
Description
Homo sapiens hsa-mir-330 precursor miRNA mir-330
Gene
family?
RF00770; mir-330

Literature search
48 open access papers mention hsa-mir-330
(282 sentences)

Sequence

54219 reads, 127 reads per million, 149 experiments
cuuuggcgaucacugccUCUCUGGGCCUGUGUCUUAGGCucugcaagaucaaccgaGCAAAGCACACGGCCUGCAGAGAggcagcgcucugccc
....(((((.(.(((((((((((((((((((.(((..((((.............)))).))))))).))))..))))))))))).).)).))).

Structure
cuuu   -  u a           --    -    U   AG    ugcaa 
    ggc ga c cugccUCUCUG  GGCC UGUG CUU  GCuc     g
    ||| || | |||||||||||  |||| |||| |||  ||||     a
    ccg cu g gacggAGAGAC  CCGG ACAC GAA  CGag     u
---c   u  c c           GU    C    -   -A    ccaac 


Annotation confidence High
Do you think this miRNA is real?
Comments
This sequence is the predicted homologue of a miRNA cloned from rat neuronal tissue [1,2], later verified in human [3].

Genome context
chr19: 45638994-45639087 [-]

Database links

Mature hsa-miR-330-5p

Accession MIMAT0004693
Description Homo sapiens hsa-miR-330-5p mature miRNA
Sequence 18 - UCUCUGGGCCUGUGUCUUAGGC - 39
Evidence experimental
cloned [3-4]
Database links
Predicted targets

Mature hsa-miR-330-3p

Accession MIMAT0000751
Description Homo sapiens hsa-miR-330-3p mature miRNA
Sequence 57 - GCAAAGCACACGGCCUGCAGAGA - 79
Evidence experimental
cloned [3]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 17616659
    Patterns of known and novel small RNAs in human cervical cancer
    "Lui WO, Pourmand N, Patterson BK, Fire A"
    "Cancer Res (2007) 67:6031-6043

  3. PubMed ID: 15634332
    New human and mouse microRNA genes found by homology search
    "Weber MJ"
    "FEBS J (2005) 272:59-73

  4. PubMed ID: 14691248
    Identification of many microRNAs that copurify with polyribosomes in mammalian neurons
    "Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G"
    "Proc Natl Acad Sci U S A (2004) 101:360-365