We have generated a dot-bracket structure for each sequence using RNAfold.
Unambiguous secondary structure.
Parsed and ASCII art drawn.
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MIR34B is a member of the miR34 family, which includes miR34A, MIR34B, and miR34C, and is characterized as a tumor suppressor with a role in various cellular processes related to cancer development [PMC4039115]. Specifically, MIR34B has been identified in the MB436 cell line, which is a subtype of triple-negative breast cancer (TNBC), indicating its presence in this particular breast cancer subtype [PMC8261273]. The tumor-suppressive functions of the miR34 family encompass regulation of cell cycling, induction of apoptosis, influence on somatic cell reprogramming, and effects on metastasis [PMC4039115].
cg -gUA UCA C - g
gugcu guuu GGCAGUG UUAG UGAUUGua cu u
||||| |||| ||||||| |||| |||||||| || g
cacgg caaa CCGUCAC AAUC ACUAACau gg g
aa acUA CUC - u u
Annotation confidence
High
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Comments
Houbaviy et al. cloned 3 closely related sequences from mouse embryonic stem cells [1], and named them miR-34a, miR-34b and miR-172. These names have been remapped to miR-34c (MIR:MI0000403), miR-34b (MIR:MI0000404) and miR-34a (MIR:MI0000584) to clarify homology with human sequences. The predominant mature miRNA in human is expressed from the 3' arm (in contrast to previous annotation) [2]. Both arms express mature products in mouse.
PubMed ID:
17604727
A mammalian microRNA expression atlas based on small RNA library sequencing
"Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
"Cell (2007) 129:1401-1414