Stem-loop osa-MIR160d

Accession

MI0000666

Description

Oryza sativa osa-MIR160d precursor miRNA

Literature search

57 open access papers mention osa-MIR160d
(186 sentences)

Sequence

415 reads, 299 reads per million, 2 experiments

ggggauaUGCCUGGCUCCCUGUAUGCCAcucgcguagcugccaaacucaguugaaacaacugccuucucccggcgagauucaggcauuguguucguacguuuggcucuacugcggaugGCGUGCGAGGAGCCAAGCAUGacc
..((.(((((.(((((((.(((((((((.((((((((..(((((((...((((((((((.(((((((((.....))))...))))))))).)))).))))))))).)))).)))).))))))))).))))))).))))).))

Structure

gg  a     C       C         c    -    cu       uca  -    -    c     ---    c 
  gg uaUGC UGGCUCC UGUAUGCCA ucgc guag  gccaaac   gu ugaa acaa ugccu   ucuc c
  || ||||| ||||||| ||||||||| |||| ||||  |||||||   || |||| |||| |||||   |||| g
  cc GUACG ACCGAGG GCGUGCGgu ggcg cauc  cgguuug   ca gcuu uguu acgga   agag g
--  a     A       A         a    u    -u       ---  u    g    -     cuu    c 

Annotation confidence Not enough data

Genome context

Chr3: 32454988-32455129 [+]

Mature osa-miR160d-5p

• Accession: MIMAT0000631
• Description: Oryza sativa osa-miR160d-5p mature miRNA
• Sequence: 8 - UGCCUGGCUCCCUGUAUGCCA - 28
• Evidence: not_experimental

Mature osa-miR160d-3p

• Accession: MIMAT0022854
• Description: Oryza sativa osa-miR160d-3p mature miRNA
• Sequence: 119 - GCGUGCGAGGAGCCAAGCAUG - 139
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 12101121
   MicroRNAs in plants
   "Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP"
   "Genes Dev (2002) 16:1616-1626


2. PubMed ID: 21901091
   Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors
   Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y
   PLoS Pathog (2011) 7:e1002176