miRBase entry: cbr-mir-1

Stem-loop cbr-mir-1


Accession
MI0000493
Description
Caenorhabditis briggsae cbr-mir-1 precursor miRNA

Literature search
2 open access papers mention cbr-mir-1
(23 sentences)

Sequence

ugcugugccgagcugcauacuuccuuacaugcccauacuguacugugaauggauaUGGAAUGUAAAGAAGUAUGUAgaacggaaucuaacggcg
.(((((.(((..(((((((((((.((((((..(((((((((.......)))).))))).)))))).)))))))))))..)))......))))).

Structure
u     -----g   ag           c      gc     -    ac 
 gcugu      ccg  cugcauacuuc uuacau  ccaua cugu  u
 |||||      |||  ||||||||||| ||||||  ||||| ||||  g
 cggca      ggc  gAUGUAUGAAG AAUGUA  GGUau ggua  u
g     aucuaa   aa           A      -A     a    ag 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1,2]. The expression of this miRNA has not been verified in C. briggsae.

Genome context
chrI: 9430166-9430259 [-]

Database links

Mature cbr-miR-1

Accession MIMAT0000465
Description Caenorhabditis briggsae cbr-miR-1 mature miRNA
Sequence 56 - UGGAAUGUAAAGAAGUAUGUA - 76
Evidence not_experimental

References

  1. PubMed ID: 11679671
    An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
    "Lau NC, Lim LP, Weinstein EG, Bartel DP"
    "Science (2001) 294:858-862

  2. PubMed ID: 11679672
    An extensive class of small RNAs in Caenorhabditis elegans
    "Lee RC, Ambros V"
    "Science (2001) 294:862-864