miRBase entry: mmu-mir-204

Stem-loop mmu-mir-204


Accession
MI0000247
Symbol
MGI: Mir204
Description
Mus musculus mmu-mir-204 precursor miRNA mir-204
Gene
family?
RF00646; mir-204

Literature search
84 open access papers mention mmu-mir-204
(852 sentences)

Sequence

26943 reads, 259 reads per million, 68 experiments
uggacUUCCCUUUGUCAUCCUAUGCCUgagaauauaugaaggagGCUGGGAAGGCAAAGGGACGUuca
(((((.((((((((((.(((((.((((...............))))))))).)))))))))).)))))

Structure
     U          A     U    gagaau 
uggac UCCCUUUGUC UCCUA GCCU      a
||||| |||||||||| ||||| ||||      u
acuUG AGGGAAACGG AGGGU CGga      a
     C          A     -    ggaagu 


Annotation confidence High
Do you think this miRNA is real?
Comments
The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [3].

Genome context
chr19: 22750605-22750672 [+]

Database links

Mature mmu-miR-204-5p

Accession MIMAT0000237
Description Mus musculus mmu-miR-204-5p mature miRNA
Sequence 6 - UUCCCUUUGUCAUCCUAUGCCU - 27
Evidence experimental
cloned [1-3], Illumina [4-5]
Database links
Predicted targets

Mature mmu-miR-204-3p

Accession MIMAT0017002
Description Mus musculus mmu-miR-204-3p mature miRNA
Sequence 45 - GCUGGGAAGGCAAAGGGACGU - 65
Evidence experimental
Illumina [5]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 12554859
    New microRNAs from mouse and human
    "Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T"
    "RNA (2003) 9:175-179

  3. PubMed ID: 16766679
    Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
    "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
    "Genes Dev (2006) 20:1732-1743

  4. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  5. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009