sort by

5 publications mentioning csi-MIR172b

Open access articles that are associated with the species Citrus sinensis and mention the gene name MIR172b. Click the [+] symbols to view sentences that include the gene name, or the word cloud on the right for a summary.

1
[+] score: 26
csi-miR172 was highly expressed in old stems, old leaves, flowers, and fruits at 145 DAFB, and has low or no expression in other tissues (Figure 1e). [score:5]
Potential target prediction for fifteen C. sinensis miRNAThe potential miRNA target genes of several conserved C. sinensis miRNAs, such as UC52-29592 (Auxin response factor 10, ARF10) for miR160, UC52-35004, UC52-31207, and UC52-10373 (Homeo domain leucine zipper, HD-Zip protein) for miR165, UC52-31207, and UC52-10373 (HD-Zip protein) for miR166, UC52-24193 (AP2) for miR172 (Additional file 4: Table S3). [score:5]
In total, we performed PPM-RACE and RLM-RACE assays on six predicted target genes (UC52-29592, UC52-35004, UC52-31207, UC52-10373, UC52-24193, and UC52-75213) which are representative targets of five conserved miRNAs (miR160, miR165, miR166, miR172, and miR482a, respectively). [score:4]
In this research, UC52-24193, which is predicted target of miR172, was found to be a member of the AP2 gene family. [score:3]
C. sinensis miRNAs and prediction of potential target mRNAsTo validate bioinformatically predicted miRNAs, 17 mature miRNA sequences (csi-miR160, csi-miR162, csi-miR165, csi-miR166a, csi-miR166b, csi-miR172, csi-miR390, csi-miR482a. [score:3]
The potential miRNA target genes of several conserved C. sinensis miRNAs, such as UC52-29592 (Auxin response factor 10, ARF10) for miR160, UC52-35004, UC52-31207, and UC52-10373 (Homeo domain leucine zipper, HD-Zip protein) for miR165, UC52-31207, and UC52-10373 (HD-Zip protein) for miR166, UC52-24193 (AP2) for miR172 (Additional file 4: Table S3). [score:3]
In summary, sequencing results were also used to confirm the predicted seventeen csi-miRNAs and to identify their precise end sequences, in which of them this study identified fifteen csi-miRNAs (csi-miR160, csi-miR162, csi-miR165, csi-miR166a, csi-miR166b, csi-miR172, csi-miR390, csi-miR482a. [score:1]
A: Lanes 1–15 are 5′ RACE products of csi-miR160, csi-miR162, csi-miR165, csi-miR166a, csi-miR166b, csi-miR172, csi-miR390, csi-miR482a. [score:1]
To validate bioinformatically predicted miRNAs, 17 mature miRNA sequences (csi-miR160, csi-miR162, csi-miR165, csi-miR166a, csi-miR166b, csi-miR172, csi-miR390, csi-miR482a. [score:1]
[1 to 20 of 9 sentences]
2
[+] score: 7
Many putative targets are transcription factors and homologs of known miRNA target genes in other plant species, such as SBP for miR156, NAC for miR164, bZIP for miR166, AP2 for miR172 and F-box for miR394. [score:5]
In the WT sRNA library, miR168, miR172 and miR156 were the most overrepresented families, with the abundance at 8,927, 4,754 and 3,566 TPM, respectively. [score:1]
These three miRNA families also frequently represented in MT sRNA library, but the difference is that the miR172 abundance ranked third (3,330 TPM) after miR156 (4,397 TPM) and miR168 (8,437 TPM) in the library. [score:1]
[1 to 20 of 3 sentences]
3
[+] score: 5
miR156 and miR172 coordinately regulate the transition from the juvenile to the adult phase of shoot development in plants, and miR156/157 and miR172 affect the ripening process of tomatoes by regulating the known ripening regulators CNR and SlAP2a (Chen et al., 2015). [score:5]
[1 to 20 of 1 sentences]
4
[+] score: 2
Additionally, miR156, miR159, miR319 and miR172 are involved in flowering regulation and phase changing from vegetative growth to reproductive growth [21, 25– 29]. [score:2]
[1 to 20 of 1 sentences]
5
[+] score: 1
It is worth noting that some N-deficiency-responsive miRNAs (e. g., miR169, miR172, miR394, miR395, miR397, miR398, miR399, miR827, miR408 and miR857) are also responsive to other nutrient stresses (i. e., B, P, Fe, S and Cu deficiencies) in plants [8, 10], indicating the involvement of miRNA -mediated crosstalk among N, B, P, Fe, S and Cu under N-deficiency. [score:1]
[1 to 20 of 1 sentences]