5 publications mentioning mdm-MIR535c

Open access articles that are associated with the species Malus domestica and mention the gene name MIR535c. Click the [+] symbols to view sentences that include the gene name, or the word cloud on the right for a summary.

1

The expression patterns of these miRNAs and their targets could be divided into four types: (1) mdm-miR156, mdm-miR160, mdm-miR535 and their targets, the SBP, AP2, AP2-like, ARF16, AFB, DC19 and RD19 genes, had the highest expression levels in roots but relatively low expression levels in fruit (Figure  9A,B,D,F and H); (2) mdm-miR393, mdm-miR398a, mdm-miR398b and their targets, the SPL2, SPL9 and ACA8 genes, were found to be expressed most abundantly in flowers but had relatively low expression levels in fruit and roots (Figure  9A,C,E,F,G and H); (3) mdm-miR172, mdm-miR162, mdm-miR162, mdm-miR5225 and their targets, the ARF17, LETM1-LIKE and ADH2 genes, showed high expression levels in leaf tissue but relatively low levels were observed in stems (Figure  9B,D,E,G and I); (4) mdm-miR858 and mdm-miR3627 and their targets, the TIR1 and MYB5 genes, had high expression levels in fruit but low levels in stems (Figure  9C,G and J).

The expression profiles of mdm-miR162, mdm-miR535, mdm-miR858, mdm-miR3727 and miR5225 were up-regulated in J leaves compared with A leaves during leaf development, while mdm-miR398a and mdm-miR398b were down-regulated in J leaves compared with A leaves, implying that these miRNAs may participate in the regulating leaf development and other biological processes (Figure  7F,G,H and I).

The expression of miRNAs and their targets in A and J leaves: mdm-miR156 (A); mdm-miR172 (B); mdm-miR393 (C); mdm-miR160 (D); mdm-miR162 (E); mdm-miR535 (F); mdm-miR3627and mdm-miR5225 (G); mdm-miR398a (H); mdm-miR398b (I); and mdm-miR858 (J).

Expression of miRNAs and their targets in different tissue: mdm-miR156 (A); mdm-miR172 (B); mdm-miR393 (C); mdm-miR160 (D); mdm-miR162 (E); mdm-miR535 (F); mdm-miR3627 and mdm-miR5225 (G); mdm-miR398a (H); mdm-miR398b (I); and mdm-miR858 (J).

The expression of miRNAs and their targets in leaves of different ages: mdm-miR156 (A); mdm-miR172 (B); mdm-miR393 (C); mdm-miR160 (D); mdm-miR162 (E); mdm-miR535 (F); mdm-miR3627 and mdm-miR5225 (G); mdm-miR398a (H); mdm-miR398b (I); and mdm-miR858 (J).

2

For example, leaf- and root-biased expression was observed for miR535, while flower-biased expression was apparent for miR828 (Figure 1b).

Of the 38 targets identified for five less-conserved miRNAs or families, a single target was found for miR2111, miR3627, and miR535 (Table 2; Table S6 in Additional file 1).

Compared to the conserved miRNAs, most of the less-conserved miRNAs exhibited relatively lower expression, with the most notable exception being miR535, which was expressed at an abundance of more than 20,000 RPM (Figure 1b).

3

While differentially-expressed miR172 and miR398 were only present in the T1/N1 group, miR167, miR391, miR7121, and miR858 were only in the T2/N2 group, and miR535 and miR7127 only in the T3/N3 group.

4

The juvenile to adult phase transition related microRNAs, mdm-miR156 and mdm-miR172, and the flowering related, mdm-miR535, mdm-miR168, and mdm-miR167, also showed high expression levels in apple shoot tips.

5

Interestingly, the majority of DE-miRNAs identified in our study (miR162, miR167, miR390, miR393, miR396, miR398, miR408, miR535, miR1511, miR2118, miR3627, and miR7124) showed opposite expression patterns compared to the ones in the previous study on phase transition in apple trees (Xing et al., 2014).