Stem-loop mdm-MIR535c

Accession

MI0023130

Description

Malus domestica mdm-MIR535c precursor miRNA

Literature search

5 open access papers mention mdm-MIR535c
(11 sentences)

Sequence

5074 reads, 271.0 reads per million, 21 experiments

ugUGACAAGGAGAGAGAGCACGCuugucaucacccaugaacggaucaugguuguuuacagguGUGCUCUCUCUUCUUGUCAUA
(((((((((((((((((((((((((((...((.((((((.....)))))).))...)))))))))))))))))))))))))))

Structure

                           cau  c      a 
ugUGACAAGGAGAGAGAGCACGCuugu   ca ccauga c
|||||||||||||||||||||||||||   || |||||| g
AUACUGUUCUUCUCUCUCGUGuggaca   gu gguacu g
                           uuu  u      a 

Annotation confidence High

Genome context

MDC011978.180: 7817-7899 [-]

Mature mdm-miR535c-5p

• Accession: MIMAT0026026
• Description: Malus domestica mdm-miR535c-5p mature miRNA
• Sequence: 3 - UGACAAGGAGAGAGAGCACGC - 23
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR535c-3p

• Accession: MIMAT0056700
• Description: Malus domestica mdm-miR535c-3p mature miRNA
• Sequence: 63 - GUGCUCUCUCUUCUUGUCAUA - 83
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47