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3 publications mentioning osa-MIR5796

Open access articles that are associated with the species Oryza sativa and mention the gene name MIR5796. Click the [+] symbols to view sentences that include the gene name, or the word cloud on the right for a summary.

[+] score: 19
Furthermore, we compared the predicted targets of differentially expressed miRNAs detected in our study to Zhang et al. [38], and the results revealed that three targets associated with the DNA methylation activity, including LOC_Os01g25450 (predicted by mes-miR2275, the down-regulated DEM in PMA), LOC_Os10g26430 (predicted by osa-miR5796, the down-regulated DEM in MA and SCP) and LOC_Os05g49930 (predicted by bdi-miR5054_L+2, the down-regulated DEM in SCP), were annotated as AIG1 family protein, agenet domain-containing protein and GRAS family transcription factor domain-containing protein, respectively (Table S17). [score:15]
In our study, we found three DEM, especially osa-miR5796 that was down-regulated in MA and SCP of Taichung65-4x and predicted a LOC_Os10g26430 gene, may be associated with the DNA methylation and transposon activity in polyploidization of rice. [score:4]
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[+] score: 15
Other miRNAs from this paper: osa-MIR156a, osa-MIR156b, osa-MIR156c, osa-MIR156d, osa-MIR156e, osa-MIR156f, osa-MIR156g, osa-MIR156h, osa-MIR156i, osa-MIR156j, osa-MIR160a, osa-MIR160b, osa-MIR160c, osa-MIR160d, osa-MIR164a, osa-MIR164b, osa-MIR166a, osa-MIR166b, osa-MIR166c, osa-MIR166d, osa-MIR166e, osa-MIR166f, osa-MIR167a, osa-MIR167b, osa-MIR167c, osa-MIR169a, osa-MIR395b, osa-MIR395d, osa-MIR395e, osa-MIR395g, osa-MIR395h, osa-MIR395i, osa-MIR395j, osa-MIR395k, osa-MIR395l, osa-MIR395s, osa-MIR395t, osa-MIR395c, osa-MIR395a, osa-MIR395f, osa-MIR395u, osa-MIR396a, osa-MIR396b, osa-MIR396c, osa-MIR397a, osa-MIR397b, osa-MIR398a, osa-MIR398b, osa-MIR399a, osa-MIR399b, osa-MIR399c, osa-MIR399d, osa-MIR399e, osa-MIR399f, osa-MIR399g, osa-MIR399h, osa-MIR399i, osa-MIR399j, osa-MIR399k, osa-MIR156k, osa-MIR156l, osa-MIR159a, osa-MIR159b, osa-MIR159c, osa-MIR159d, osa-MIR159e, osa-MIR159f, osa-MIR160e, osa-MIR160f, osa-MIR164c, osa-MIR164d, osa-MIR164e, osa-MIR166k, osa-MIR166l, osa-MIR167d, osa-MIR167e, osa-MIR167f, osa-MIR167g, osa-MIR167h, osa-MIR167i, osa-MIR169b, osa-MIR169c, osa-MIR169d, osa-MIR169e, osa-MIR169f, osa-MIR169g, osa-MIR169h, osa-MIR169i, osa-MIR169j, osa-MIR169k, osa-MIR169l, osa-MIR169m, osa-MIR169n, osa-MIR169o, osa-MIR169p, osa-MIR169q, osa-MIR172a, osa-MIR172b, osa-MIR172c, osa-MIR166g, osa-MIR166h, osa-MIR166i, osa-MIR408, osa-MIR172d, osa-MIR167j, osa-MIR166m, osa-MIR166j, osa-MIR164f, osa-MIR396e, osa-MIR528, osa-MIR395m, osa-MIR395n, osa-MIR395o, osa-MIR395p, osa-MIR395q, osa-MIR395v, osa-MIR395w, osa-MIR395r, osa-MIR1427, osa-MIR169r, osa-MIR827, osa-MIR396f, osa-MIR2118a, osa-MIR2118b, osa-MIR2118c, osa-MIR2118d, osa-MIR2118e, osa-MIR2118f, osa-MIR2118g, osa-MIR2118h, osa-MIR2118i, osa-MIR2118j, osa-MIR2118k, osa-MIR2118l, osa-MIR2118m, osa-MIR2118n, osa-MIR2118o, osa-MIR2118p, osa-MIR2118q, osa-MIR2118r, osa-MIR2275a, osa-MIR2275b, osa-MIR396g, osa-MIR396h, osa-MIR396d, osa-MIR395x, osa-MIR395y, osa-MIR5485, osa-MIR5486, osa-MIR5487, osa-MIR5488, osa-MIR5492, osa-MIR5497, osa-MIR5509, osa-MIR2275c, osa-MIR5517, osa-MIR2275d, osa-MIR5528, osa-MIR5791, osa-MIR5792, osa-MIR5793, osa-MIR5797, osa-MIR5800, osa-MIR5806, osa-MIR5818, osa-MIR5179
As the functional information for these non-conserved miRNA families is still limited, our target prediction results show that these miRNA families negatively-regulate a number of important drought-related target genes such as those encoding calmodulin binding protein (osa-miR1427, osa-miR5796), NBS-LRR disease resistance protein (osa-MIR2118), glutathione S-transferase (osa-miR2275d), dehydrin (osa-miR5793), transcription factors and protein kinases (S2 Table). [score:8]
Out of the 32 non-conserved miRNA families, 11 families have expression counts >100; (osa-miR2275d, osa-miR5179, osa-miR5486, osa-miR5488, osa-miR5509, osa-miR5793, osa-miR5796, osa-miR5797, osa-miR5800, osa-miR5806, osa-miR5818) and 4 families have expression counts >1000; (osa-miR5485, osa-miR5487, osa-miR5497, osa-miR5791) while the remaining miRNA families have expression count lower than 100. [score:7]
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[+] score: 1
In the same way, other annotated MIR loci were evidenced in our analysis of 21-nt phased loci as overlapping loci, suggesting that these loci are phasiRNA-generating loci rather than MIR ones: osa- MIR5486, osa-MIR5488, osa- MIR5506, osa- MIR5514, osa- miR5516, osa- miR5519, osa- MIR5517, osa- MIR5527, osa- MIR5530, osa- MIR5791, osa- MIR5796, osa-MIR5800 and osa- MIR5822 (Additional file 6). [score:1]
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