Stem-loop sequence mdm-MIR171q

Accession

MI0035657 (change log)

Description

Malus domestica miR171q stem-loop

Literature search

9 open access papers mention mdm-MIR171q
(40 sentences)

Stem-loop

   --agaaaga     auu    u    uuga   g        uc         a     a a u    ucaa 
5'          gaugg   ggga cagu    acg gauauugg  cgguucaau agaaa c g gcuc    a
            |||||   |||| ||||    ||| ||||||||  ||||||||| ||||| | | ||||    g
3'          cuauu   uccu guca    ugc cuauaacc  gccgaguua uuuuu g c cgag    u
   cccuauaua     --c    u    -cug   a        gu         g     c g u    uucg 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates: MDC008623.473: 2694-2835 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0035657

Mature sequence mdm-miR171q

• Accession: MIMAT0043605
• Sequence: 32 - ggauauugguccgguucaaua - 52
• Evidence: experimental; Illumina [1]

References

1. "Identification of apple miRNAs and their potential role in fire blight resistance" Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I Trees Genet Genomes. 11:812(2014).