Stem-loop sequence mdm-MIR171p

Accession

MI0035635 (change log)

Description

Malus domestica miR171p stem-loop

Literature search

9 open access papers mention mdm-MIR171p
(40 sentences)

Stem-loop

   ------uuuu           u  ug  uacau  caa             c       u   -  cg       uauc g 
5'           gauggagaaag ug  aa     ag   agguauuggcgcg cucaauu gaa cg  uggcuaa    g a
             ||||||||||| ||  ||     ||   ||||||||||||| ||||||| ||| ||  |||||||    |  
3'           cuaccucuuuc ac  uu     uc   ucuauaacugcgc gaguuaa cuu gc  accgauu    c g
   acuucccuac           u  gu  -----  --c             c       u   a  au       ---- a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates: MDC015454.116: 3728-3873 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0035635

Mature sequence mdm-miR171p

• Accession: MIMAT0043582
• Sequence: 97 - uugagccgcgucaauaucucc - 117
• Evidence: experimental; Illumina [1]

References

1. "Identification of apple miRNAs and their potential role in fire blight resistance" Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I Trees Genet Genomes. 11:812(2014).