Stem-loop mdm-MIR169j

Accession

MI0035631

Description

Malus domestica mdm-MIR169j precursor miRNA

Literature search

4 open access papers mention mdm-MIR169j
(9 sentences)

Sequence

uauucuacuuaugugguauuuuucaucuuaagucuugcaugugggaacgagguaugcagugCAGCCAAGGAUGACUUGCCGGcaacaaugcucccauacaauauuuguauaucaacccuaaucuuguagaucuauauauguauauauguauaugugcauagcauauacauaugggauguaucauguauguugaugucaucucaugcguauaugcaugauugauaagauacaugaucuugkgacacugaguugaucggcaagucgucucuggcuacauuuuugccucuuuuucucaugcuagauuugugaugacgacgauaacaaccacgauc
............((((((((..(((((.(((((((.(((((.(((((.((((((...((((.(((((.((((((((((((((((((.........((((((...))))))..........(((((((.((((....((((((((((....))))))))))((((((((.((((((((((((((.......))))).))))))))).))))))))..)))).)))))))....................)))).)))))))))))))).))))).))))..)))))).))))).))))).))))))).)))))....)))....)))))....

Structure

uauucuacuuau     ----   --uu     u       u     u     c      ugc    C     A              -    aaugcucccauacaauauuuguauaucaacccua       a    uauauauguauauauguauaugugcaua        a         -     ug 
            guggu    auu    ucauc uaagucu gcaug gggaa gaggua   agug AGCCA GGAUGACUUGCCGG caac                                  aucuugu gauc                            gcauauac uaugggaug uauca  u
            |||||    |||    ||||| ||||||| ||||| ||||| ||||||   |||| ||||| |||||||||||||| ||||                                  ||||||| ||||                            |||||||| ||||||||| |||||  a
            cacca    uag    aguag guuuaga cguac cuuuu cuccgu   uuac ucggu ucugcugaacggcu guug                                  uagaaua uuag                            cguauaug guacucuac guagu  u
--------cuag     acaa   cagc     u       u     u     u      -uu    a     c              a    --------------agucacagkguucuaguaca       g    --------------------------ua        c         u     ug 

Annotation confidence Not enough data

Genome context

MDC017225.184: 8894-9225 [+]

Mature mdm-miR169j

• Accession: MIMAT0043578
• Description: Malus domestica mdm-miR169j mature miRNA
• Sequence: 62 - CAGCCAAGGAUGACUUGCCGG - 82
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812