Stem-loop mdm-MIR395j

Accession

MI0035627

Description

Malus domestica mdm-MIR395j precursor miRNA

Literature search

5 open access papers mention mdm-MIR395j
(49 sentences)

Sequence

aauuagcaggugucaccaagaGUUCCCUUGACCACUUCAUUGggaaauugccguuuuugcaacuauauauccugcggaaguguuugggagaacuccuguuggcauuugauuuu
......(((((((((.((.(((((((((.(((.(((((...((((.(((((.......))).....)).))))...)))))))).))).)))))).)).))))))))).....

Structure

aauuag         c  a      -   U   C     AUU    a  -----   cg 
      cagguguca ca gaGUUC CCU GAC ACUUC   Ggga au     ugc  u
      ||||||||| || |||||| ||| ||| |||||   |||| ||     |||  u
      guuuacggu gu cucaag ggg uug ugaag   uccu ua     acg  u
-uuuua         u  c      a   u   -     gcg    a  uauca   uu 

Annotation confidence Not enough data

Genome context

MDC003846.250: 12355-12467 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from mdm-MIR395j

Mature mdm-miR395j

• Accession: MIMAT0043574
• Description: Malus domestica mdm-miR395j mature miRNA
• Sequence: 22 - GUUCCCUUGACCACUUCAUUG - 42
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812