Stem-loop sequence mdm-MIR530c

Accession

MI0035599 (change log)

Description

Malus domestica miR530c stem-loop

Literature search

1 open access papers mention mdm-MIR530c
(2 sentences)

Stem-loop

   --acagcgca  u         uu  u            u            -g    c    a    u        cuugaaaaacccuaaagccaaagcuucagagaauggaaaagguuuuagauauau 
5'           ga gccaaaaug  gc uuuaucugcauu gcaccugcacuu  ugcu guuc uguu cuuccuuc                                                      g
             || |||||||||  || |||||||||||| ||||||||||||  |||| |||| |||| ||||||||                                                       
3'           cu ugguuuuac  cg aaguggacguga cguggacgugga  acga caag acga gaaggaag                                                      a
   acaaaaauua  -         --  u            c            ga    a    g    -        acuaaagguaaaaggaagaraagggaauaaggaaaggagaacaguaaaaacaag 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates: MDC016706.224: 4106-4362 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0035599

Mature sequence mdm-miR530c

• Accession: MIMAT0043544
• Sequence: 32 - ugcauuugcaccugcacuugu - 52
• Evidence: experimental; Illumina [1]

References

1. "Identification of apple miRNAs and their potential role in fire blight resistance" Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I Trees Genet Genomes. 11:812(2014).