Stem-loop sequence mdm-MIR530b

Accession

MI0035598 (change log)

Description

Malus domestica miR530b stem-loop

Literature search

1 open access papers mention mdm-MIR530b
(2 sentences)

Stem-loop

   --acagcgca   g        aa  u                           acuaguu          -a       gaaaaacccugaaaccaagcuucaaagcauggcaaagguuuuagauguaugagag 
5'           gau ccaaaaug  gc uuuaucugcauuugcaccugcacuugu       cuuguuucuu  cuuccuu                                                       g
             ||| ||||||||  || |||||||||||||||||||||||||||       ||||||||||  |||||||                                                        
3'           cua gguuuuac  cg aaguggacgugaacguggacguggaca       gaacaaggag  gaaggaa                                                       a
   accacaauua   -        --  u                           -----ac          ga       gacugaagguaaaaggaggauaaggaaauaaggaaaggagaaaagaagaaaaaaa 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates: MDC019515.368: 17290-17550 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0035598

Mature sequence mdm-miR530b

• Accession: MIMAT0043543
• Sequence: 32 - ugcauuugcaccugcacuugu - 52
• Evidence: experimental; Illumina [1]

References

1. "Identification of apple miRNAs and their potential role in fire blight resistance" Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I Trees Genet Genomes. 11:812(2014).