Stem-loop sequence mdm-MIR159e

Accession

MI0035595 (change log)

Description

Malus domestica miR159e stem-loop

Literature search

11 open access papers mention mdm-MIR159e
(68 sentences)

Stem-loop

   auauauauguau u   -     -uua   a            ga             -----   a   u     g  ag    g     c    g uc   g  u     a      --au      ga  ag 
5'             g ggg uaggg    agg guggagcuccuu  aguccaaaagaag     gug ugc gggug au  agcu cugag uaug a  cca ag ccuau uauccu    aucgca  uc  a
               | ||| |||||    ||| ||||||||||||  |||||||||||||     ||| ||| ||||| ||  |||| ||||| |||| |  ||| || ||||| ||||||    ||||||  ||   
3'             c cuc gucuc    ucc caucucgaggga  uuagguuuuuuuc     cgc aug uccau ua  ucga gacuc auac u  ggu uu ggaua guagga    uagcgu  ag  u
   ---ucucucucu u   u     ucuc   a            ag             uccgu   -   -     -  cg    g     u    g uc   g  c     -      agac      --  ac 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates: MDC011193.361: 3986-4239 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0035595

Mature sequence mdm-miR159e

• Accession: MIMAT0043540
• Sequence: 205 - uuuggauugaagggagcucua - 225
• Evidence: experimental; Illumina [1]

References

1. "Identification of apple miRNAs and their potential role in fire blight resistance" Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I Trees Genet Genomes. 11:812(2014).