Stem-loop sequence stu-MIR156f

Accession

MI0025991 (change log)

Description

Solanum tuberosum miR156f stem-loop

Gene family

MIPF0000008; MIR156

Literature search

9 open access papers mention stu-MIR156f
(22 sentences)

Stem-loop

   --c        -    -        a a  uau         a   uuuuuac    u 
5'    ugacagaa gaga gugagcau c ca   aauuauaua aua       uuaa u
      |||||||| |||| |||||||| | ||   ||||||||| |||       |||| u
3'    acugucuu cucu cacucgug g gu   uuaauauau ugu       aguu u
   cua        u    u        a c  --u         a   uauauau    c 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SolTub3.0; GCA_000226075.1): JH137904.1: 1311175-1311287 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025991

Mature sequence stu-miR156f-5p

• Accession: MIMAT0031347
• Sequence: 1 - cugacagaagagagugagca - 20
• Evidence: experimental; Illumina [1]

Mature sequence stu-miR156f-3p

• Accession: MIMAT0031348
• Sequence: 92 - cucacuucucuuucugucaauc - 113
• Evidence: experimental; Illumina [1]

References

1. PMID:23437348 "Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing" Zhang R, Marshall D, Bryan GJ, Hornyik C PLoS One. 8:e57233(2013).