Stem-loop stu-MIR390

Accession

MI0025988

Description

Solanum tuberosum stu-MIR390 precursor miRNA

Gene family

MIPF0000101; MIR390

Literature search

5 open access papers mention stu-MIR390
(7 sentences)

Sequence

AAGCUCAGGAGGGAUAGCACCaugaauacaucuuaauaacuaucuauagCGCUAUCCAUCUUGAGUUUUA
((((((((((.(((((((.(.(((.(((............))).))).).))))))).))))))))))..

Structure

--          G       A C   a   caucu 
  AAGCUCAGGA GGAUAGC C aug aua     u
  |||||||||| ||||||| | ||| |||      
  UUUGAGUUCU CCUAUCG g uau uau     a
AU          A       C a   c   caaua 

Annotation confidence Not enough data

Genome context

JH138232.1: 264152-264221 [-]

Mature stu-miR390-5p

• Accession: MIMAT0031343
• Description: Solanum tuberosum stu-miR390-5p mature miRNA
• Sequence: 1 - AAGCUCAGGAGGGAUAGCACC - 21
• Evidence: experimental ; Illumina [1]

Mature stu-miR390-3p

• Accession: MIMAT0031344
• Description: Solanum tuberosum stu-miR390-3p mature miRNA
• Sequence: 50 - CGCUAUCCAUCUUGAGUUUUA - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233