Stem-loop sequence stu-MIR390

Accession

MI0025988 (change log)

Description

Solanum tuberosum miR390 stem-loop

Gene family

MIPF0000101; MIR390

Literature search

5 open access papers mention stu-MIR390
(7 sentences)

Stem-loop

   --          g       a c   a   caucu 
5'   aagcucagga ggauagc c aug aua     u
     |||||||||| ||||||| | ||| |||      
3'   uuugaguucu ccuaucg g uau uau     a
   au          a       c a   c   caaua 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SolTub3.0; GCA_000226075.1): JH138232.1: 264152-264221 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025988

Mature sequence stu-miR390-5p

• Accession: MIMAT0031343
• Sequence: 1 - aagcucaggagggauagcacc - 21
• Evidence: experimental; Illumina [1]

Mature sequence stu-miR390-3p

• Accession: MIMAT0031344
• Sequence: 50 - cgcuauccaucuugaguuuua - 70
• Evidence: experimental; Illumina [1]

References

1. PMID:23437348 "Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing" Zhang R, Marshall D, Bryan GJ, Hornyik C PLoS One. 8:e57233(2013).