Stem-loop sequence stu-MIR397

Accession

MI0025987 (change log)

Description

Solanum tuberosum miR397 stem-loop

Gene family

MIPF0000120; MIR397

Literature search

4 open access papers mention stu-MIR397
(8 sentences)

Stem-loop

   --        c           cau uu      uuu   u 
5'   auugagug agcguugauga   a  ugagaa   cug a
     |||||||| |||||||||||   |  ||||||   ||| u
3'   uaacucac ucgcaacuacu   u  acucuu   ggu u
   ac        a           --u uu      ucc   u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SolTub3.0; GCA_000226075.1): JH138102.1: 591745-591825 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025987

Mature sequence stu-miR397-5p

• Accession: MIMAT0031341
• Sequence: 1 - auugagugcagcguugaugac - 21
• Evidence: experimental; Illumina [1]

Mature sequence stu-miR397-3p

• Accession: MIMAT0031342
• Sequence: 61 - caucaacgcuacacucaauca - 81
• Evidence: experimental; Illumina [1]

References

1. PMID:23437348 "Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing" Zhang R, Marshall D, Bryan GJ, Hornyik C PLoS One. 8:e57233(2013).