Stem-loop sequence stu-MIR408b

Accession

MI0025986 (change log)

Description

Solanum tuberosum miR408b stem-loop

Gene family

MIPF0000102; MIR408

Literature search

3 open access papers mention stu-MIR408b
(4 sentences)

Stem-loop

   --a      c   a   a     ag   u    uu 
5'    cgggga gag cag gcaug  aug gcaa  u
      |||||| ||| ||| |||||  ||| ||||  u
3'    gucccu cuc guc cguac  uau cguu  u
   ucg      u   c   a     cu   c    ca 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SolTub3.0; GCA_000226075.1): JH138061.1: 638573-638643 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025986

Mature sequence stu-miR408b-5p

• Accession: MIMAT0031339
• Sequence: 1 - acggggacgagacagagcaug - 21
• Evidence: experimental; Illumina [1]

Mature sequence stu-miR408b-3p

• Accession: MIMAT0031340
• Sequence: 51 - ugcacugccucuucccuggcu - 71
• Evidence: experimental; Illumina [1]

References

1. PMID:23437348 "Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing" Zhang R, Marshall D, Bryan GJ, Hornyik C PLoS One. 8:e57233(2013).