Stem-loop stu-MIR408b

Accession

MI0025986

Description

Solanum tuberosum stu-MIR408b precursor miRNA

Gene family

MIPF0000102; MIR408

Literature search

3 open access papers mention stu-MIR408b
(4 sentences)

Sequence

ACGGGGACGAGACAGAGCAUGagaugugcaauuuuuacuugccuauuccaUGCACUGCCUCUUCCCUGGCU
.((((((.(((.(((.(((((.((((.((((.......)))).)))).))))).))).))).))))))...

Structure

--A      C   A   A     a    u    uu 
   CGGGGA GAG CAG GCAUG gaug gcaa  u
   |||||| ||| ||| ||||| |||| ||||  u
   GUCCCU CUC GUC CGUac uuau cguu  u
UCG      U   C   A     c    c    ca 

Annotation confidence Not enough data

Genome context

JH138061.1: 638573-638643 [+]

Mature stu-miR408b-5p

• Accession: MIMAT0031339
• Description: Solanum tuberosum stu-miR408b-5p mature miRNA
• Sequence: 1 - ACGGGGACGAGACAGAGCAUG - 21
• Evidence: experimental ; Illumina [1]

Mature stu-miR408b-3p

• Accession: MIMAT0031340
• Description: Solanum tuberosum stu-miR408b-3p mature miRNA
• Sequence: 51 - UGCACUGCCUCUUCCCUGGCU - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233