Stem-loop sequence stu-MIR408a

Accession

MI0025985 (change log)

Description

Solanum tuberosum miR408a stem-loop

Gene family

MIPF0000102; MIR408

Literature search

5 open access papers mention stu-MIR408a
(12 sentences)

Stem-loop

   --a      c     a c     ag   ua     u 
5'    caggga gaggc g gcaug  aug  caauu u
      |||||| ||||| | |||||  |||  ||||| a
3'    gucccu cuccg c cguac  uac  guuga c
   uug      u     a a     cu   cc     u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SolTub3.0; GCA_000226075.1): JH138061.1: 680411-680483 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025985

Mature sequence stu-miR408a-5p

• Accession: MIMAT0031337
• Sequence: 1 - acagggacgaggcagcgcaug - 21
• Evidence: experimental; Illumina [1]

Mature sequence stu-miR408a-3p

• Accession: MIMAT0031338
• Sequence: 53 - ugcacagccucuucccugguu - 73
• Evidence: experimental; Illumina [1]

References

1. PMID:23437348 "Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing" Zhang R, Marshall D, Bryan GJ, Hornyik C PLoS One. 8:e57233(2013).