Stem-loop sequence stu-MIR398b

Accession

MI0025983 (change log)

Description

Solanum tuberosum miR398b stem-loop

Gene family

MIPF0000107; MIR398

Literature search

4 open access papers mention stu-MIR398b
(4 sentences)

Stem-loop

   --ga   u    u                    -    cuc 
5'     gug gccu agaacacagguguauuuugg ucua   c
       ||| |||| |||||||||||||||||||| ||||   u
3'     cac ugga ucuuguguucguauaaaacc aggu   g
   uccc   -    c                    c    uuu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SolTub3.0; GCA_000226075.1): JH138056.1: 472688-472768 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025983

Mature sequence stu-miR398b-5p

• Accession: MIMAT0031333
• Sequence: 1 - gagugugccuuagaacacaggu - 22
• Evidence: experimental; Illumina [1]

Mature sequence stu-miR398b-3p

• Accession: MIMAT0031334
• Sequence: 61 - uuguguucucaggucaccccu - 81
• Evidence: experimental; Illumina [1]

References

1. PMID:23437348 "Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing" Zhang R, Marshall D, Bryan GJ, Hornyik C PLoS One. 8:e57233(2013).