Stem-loop sequence stu-MIR398a

Accession

MI0025982 (change log)

Description

Solanum tuberosum miR398a stem-loop

Gene family

MIPF0000107; MIR398

Literature search

4 open access papers mention stu-MIR398a
(4 sentences)

Stem-loop

   --   u                  auggg       uguuucu     u 
5'   ggg ugauuugagaacauaugu     cauauuu       aacaa u
     ||| ||||||||||||||||||     |||||||       |||||  
3'   ccc gcuggacucuuguauaca     guguaaa       uuguu u
   gu   c                  ---ca       ----uau     a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SolTub3.0; GCA_000226075.1): JH138006.1: 144958-145048 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025982

Mature sequence stu-miR398a-5p

• Accession: MIMAT0031331
• Sequence: 1 - ggguugauuugagaacauaug - 21
• Evidence: experimental; Illumina [1]

Mature sequence stu-miR398a-3p

• Accession: MIMAT0031332
• Sequence: 71 - uauguucucaggucgccccug - 91
• Evidence: experimental; Illumina [1]

References

1. PMID:23437348 "Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing" Zhang R, Marshall D, Bryan GJ, Hornyik C PLoS One. 8:e57233(2013).