Stem-loop sequence stu-MIR399j

Accession

MI0025972 (change log)

Description

Solanum tuberosum miR399j stem-loop

Gene family

MIPF0000015; MIR399

Literature search

4 open access papers mention stu-MIR399j
(12 sentences)

Stem-loop

   --    ua      a     a  -     ---      u 
5'   gggc  cucucu uuggc ua cgguu   auaugu c
     ||||  |||||| ||||| || |||||   |||||| a
3'   cccg  gagagg aaccg au gucga   uauaca u
   gu    uc      a     c  a     cuu      c 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SolTub3.0; GCA_000226075.1): JH137943.1: 1373207-1373281 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025972

Mature sequence stu-miR399j-5p

• Accession: MIMAT0031312
• Sequence: 1 - gggcuacucucuauuggcaua - 21
• Evidence: experimental; Illumina [1]

Mature sequence stu-miR399j-3p

• Accession: MIMAT0031313
• Sequence: 55 - cgccaaaggagagcugcccug - 75
• Evidence: experimental; Illumina [1]

References

1. PMID:23437348 "Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing" Zhang R, Marshall D, Bryan GJ, Hornyik C PLoS One. 8:e57233(2013).