Stem-loop stu-MIR399j

Accession

MI0025972

Description

Solanum tuberosum stu-MIR399j precursor miRNA

Gene family

MIPF0000015; MIR399

Literature search

4 open access papers mention stu-MIR399j
(12 sentences)

Sequence

GGGCUACUCUCUAUUGGCAUAcgguuauauguucaucacauauuucagcugauaCGCCAAAGGAGAGCUGCCCUG
((((..((((((.(((((.(((((((((((((.....))))))...))))).)).))))).))))))..))))..

Structure

--    UA      A     A  -     ---      u 
  GGGC  CUCUCU UUGGC UA cgguu   auaugu c
  ||||  |||||| ||||| || |||||   |||||| a
  CCCG  GAGAGG AACCG au gucga   uauaca u
GU    UC      A     C  a     cuu      c 

Annotation confidence Not enough data

Genome context

JH137943.1: 1373207-1373281 [-]

Mature stu-miR399j-5p

• Accession: MIMAT0031312
• Description: Solanum tuberosum stu-miR399j-5p mature miRNA
• Sequence: 1 - GGGCUACUCUCUAUUGGCAUA - 21
• Evidence: experimental ; Illumina [1]

Mature stu-miR399j-3p

• Accession: MIMAT0031313
• Description: Solanum tuberosum stu-miR399j-3p mature miRNA
• Sequence: 55 - CGCCAAAGGAGAGCUGCCCUG - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233