Stem-loop sequence stu-MIR167d

Accession

MI0025970 (change log)

Description

Solanum tuberosum miR167d stem-loop

Gene family

MIPF0000023; MIR167_1

Literature search

4 open access papers mention stu-MIR167d
(9 sentences)

Stem-loop

   --      u    g        aaa   a   a   au 
5'   ugaagc gcca caugaucu   cuu ccu caa  u
     |||||| |||| ||||||||   ||| ||| |||  u
3'   acuucg uggu guacuaga   gaa gga guu  a
   cc      u    -        cua   c   -   au 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SolTub3.0; GCA_000226075.1): JH138225.1: 216951-217025 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025970

Mature sequence stu-miR167d-5p

• Accession: MIMAT0031309
• Sequence: 1 - ugaagcugccagcaugaucua - 21
• Evidence: experimental; Illumina [1]

Mature sequence stu-miR167d-3p

• Accession: MIMAT0031310
• Sequence: 56 - gaucaugugguugcuucacc - 75
• Evidence: experimental; Illumina [1]

References

1. PMID:23437348 "Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing" Zhang R, Marshall D, Bryan GJ, Hornyik C PLoS One. 8:e57233(2013).