Stem-loop sequence stu-MIR171d

Accession

MI0025966 (change log)

Description

Solanum tuberosum miR171d stem-loop

Gene family

MIPF0000030; MIR171_1

Literature search

7 open access papers mention stu-MIR171d
(36 sentences)

Stem-loop

   --a        ug             a   acac    uua 
5'    gauauugg  cgguucaauuaga agc    uucu   u
      ||||||||  ||||||||||||| |||    ||||    
3'    cuauaacc  gccgaguuaauuu uug    aaga   a
   gca        gu             a   cuuc    uau 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SolTub3.0; GCA_000226075.1): JH137887.1: 1016160-1016241 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025966

Mature sequence stu-miR171d-5p

• Accession: MIMAT0031301
• Sequence: 1 - agauauuggugcgguucaauu - 21
• Evidence: experimental; Illumina [1]

Mature sequence stu-miR171d-3p

• Accession: MIMAT0031302
• Sequence: 62 - uugagccgugccaauaucacg - 82
• Evidence: experimental; Illumina [1]

References

1. PMID:23437348 "Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing" Zhang R, Marshall D, Bryan GJ, Hornyik C PLoS One. 8:e57233(2013).