Stem-loop sequence stu-MIR156d

Accession

MI0025965 (change log)

Description

Solanum tuberosum miR156d stem-loop

Gene family

MIPF0000008; MIR156

Literature search

10 open access papers mention stu-MIR156d
(24 sentences)

Stem-loop

   --u         -           u     --   u     aauuuca 
5'    ugacagaag auagagagcac aauga  uga augcu       u
      ||||||||| ||||||||||| |||||  ||| |||||        
3'    acugucuuc uaucucucgug uuacu  acu uacga       u
   acu         g           u     uc   c     aaacgac 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SolTub3.0; GCA_000226075.1): JH138336.1: 107387-107479 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025965

Mature sequence stu-miR156d-5p

• Accession: MIMAT0031299
• Sequence: 1 - uugacagaagauagagagcac - 21
• Evidence: experimental; Illumina [1]

Mature sequence stu-miR156d-3p

• Accession: MIMAT0031300
• Sequence: 72 - gcucucuaugcuucugucauca - 93
• Evidence: experimental; Illumina [1]

References

1. PMID:23437348 "Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing" Zhang R, Marshall D, Bryan GJ, Hornyik C PLoS One. 8:e57233(2013).