Stem-loop sequence stu-MIR172c

Accession

MI0025958 (change log)

Description

Solanum tuberosum miR172c stem-loop

Gene family

MIPF0000035; MIR172

Literature search

10 open access papers mention stu-MIR172c
(52 sentences)

Stem-loop

   --      u         a    gauuuau     au        ccacg     - ug  ag          a 
5'   agcauc ucaagauuc caua       auaau  auagaguu     auggg g  aa  ugauuaauua u
     |||||| ||||||||| ||||       |||||  ||||||||     ||||| |  ||  ||||||||||  
3'   ucguag aguucuaag gugu       uauua  uaucucgg     uaucc c  uu  auuaauuaau a
   cg      u         a    -aguuuu     au        uuaua     u gu  -a          u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SolTub3.0; GCA_000226075.1): JH137874.1: 229149-229293 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025958

Mature sequence stu-miR172c-5p

• Accession: MIMAT0031288
• Sequence: 1 - agcaucuucaagauucaca - 19
• Evidence: experimental; Illumina [1]

Mature sequence stu-miR172c-3p

• Accession: MIMAT0031289
• Sequence: 127 - agaaucuugaugaugcugc - 145
• Evidence: experimental; Illumina [1]

References

1. PMID:23437348 "Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing" Zhang R, Marshall D, Bryan GJ, Hornyik C PLoS One. 8:e57233(2013).