Stem-loop sequence stu-MIR399i

Accession

MI0025938 (change log)

Description

Solanum tuberosum miR399i stem-loop

Gene family

MIPF0000015; MIR399

Literature search

4 open access papers mention stu-MIR399i
(12 sentences)

Stem-loop

   --    u  a    a        -      ----u      -----g   cu 
5'   gggc ac cucu uuggcaug cagcuu     uuuggu      gcu  a
     |||| || |||| |||||||| ||||||     ||||||      |||   
3'   cccg ug gagg aaccguau gucgag     aaacua      cga  a
   au    u  a    a        a      uuuau      guuuaa   ug 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SolTub3.0; GCA_000226075.1): JH138739.1: 10330-10423 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025938

Mature sequence stu-miR399i-5p

• Accession: MIMAT0031260
• Sequence: 1 - gggcuacacucuauuggcaug - 21
• Evidence: experimental; Illumina [1]

Mature sequence stu-miR399i-3p

• Accession: MIMAT0031261
• Sequence: 74 - ugccaaaggagaguugcccua - 94
• Evidence: experimental; Illumina [1]

References

1. PMID:23437348 "Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing" Zhang R, Marshall D, Bryan GJ, Hornyik C PLoS One. 8:e57233(2013).