Stem-loop sequence stu-MIR171a

Accession

MI0025936 (change log)

Description

Solanum tuberosum miR171a stem-loop

Gene family

MIPF0000030; MIR171_1

Literature search

8 open access papers mention stu-MIR171a
(38 sentences)

Stem-loop

   --       c       c      aac     -      a    u 
5'   uauuggc ugguuca ucagac   aaaau gaaacu uauu a
     ||||||| ||||||| ||||||   ||||| |||||| |||| a
3'   auaaccg gccgagu aguuug   uuuug cuuuga gugg a
   cu       u       u      -cc     u      g    u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SolTub3.0; GCA_000226075.1): JH137810.1: 1766224-1766312 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025936

Mature sequence stu-miR171a-5p

• Accession: MIMAT0031256
• Sequence: 1 - uauuggccugguucacucaga - 21
• Evidence: experimental; Illumina [1]

Mature sequence stu-miR171a-3p

• Accession: MIMAT0031257
• Sequence: 69 - ugauugagccgugccaauauc - 89
• Evidence: experimental; Illumina [1]

References

1. PMID:23437348 "Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing" Zhang R, Marshall D, Bryan GJ, Hornyik C PLoS One. 8:e57233(2013).