Stem-loop stu-MIR166d

Accession

MI0025935

Description

Solanum tuberosum stu-MIR166d precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

7 open access papers mention stu-MIR166d
(19 sentences)

Sequence

AGAAUGUCGUCUGGUUCGAGAucuuucauaagaagguaacaugcaaugagaugauuUCGGACCAGGCUUCAUUCCCC
.(((((..(((((((((((((((((((((.....(....).....)))))).)))))))))))))))..)))))...

Structure

--A     UC               -      aagaa g 
   GAAUG  GUCUGGUUCGAGAuc uuucau     g u
   |||||  ||||||||||||||| ||||||     |  
   CUUAC  CGGACCAGGCUuuag agagua     c a
CCC     UU               u      acgua a 

Annotation confidence Not enough data

Genome context

JH138443.1: 48077-48153 [-]

Mature stu-miR166d-5p

• Accession: MIMAT0031254
• Description: Solanum tuberosum stu-miR166d-5p mature miRNA
• Sequence: 1 - AGAAUGUCGUCUGGUUCGAGA - 21
• Evidence: experimental ; Illumina [1]

Mature stu-miR166d-3p

• Accession: MIMAT0031255
• Description: Solanum tuberosum stu-miR166d-3p mature miRNA
• Sequence: 57 - UCGGACCAGGCUUCAUUCCCC - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233