Stem-loop stu-MIR3627

Accession

MI0025930

Description

Solanum tuberosum stu-MIR3627 precursor miRNA

Literature search

1 open access papers mention stu-MIR3627
(1 sentences)

Sequence

UCGCAGGAGAGAUGGCACUUAGcauuccuuuuaauugguaaaaugccuaaauggaaccaauuAAGUGCCUCUGUCUUUCGACA
(((.((((.(((.(((((((((..((((.((((...((((...)))))))).))))....)))))))))))).)))).)))..

Structure

--   C    G   U         --ca    u    auu    a 
  UCG AGGA AGA GGCACUUAG    uucc uuua   ggua  
  ||| |||| ||| |||||||||    |||| ||||   |||| a
  AGC UUCU UCU CCGUGAAuu    aagg aaau   ccgu  
AC   U    G   -         aacc    u    ---    a 

Annotation confidence Not enough data

Genome context

JH137794.1: 2388118-2388200 [-]

Mature stu-miR3627-5p

• Accession: MIMAT0031245
• Description: Solanum tuberosum stu-miR3627-5p mature miRNA
• Sequence: 1 - UCGCAGGAGAGAUGGCACUUAG - 22
• Evidence: experimental ; Illumina [1]

Mature stu-miR3627-3p

• Accession: MIMAT0031246
• Description: Solanum tuberosum stu-miR3627-3p mature miRNA
• Sequence: 63 - AAGUGCCUCUGUCUUUCGACA - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233