Stem-loop sequence stu-MIR399c

Accession

MI0025875 (change log)

Description

Solanum tuberosum miR399c stem-loop

Gene family

MIPF0000015; MIR399

Literature search

4 open access papers mention stu-MIR399c
(12 sentences)

Stem-loop

   --    ua      a        -  c  aua 
5'   gggc  cucucu uuggcaug ca cu   u
     ||||  |||||| |||||||| || ||   a
3'   cccg  gagagg aaccguac gu ga   u
   gu    uc      a        a  c  auu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SolTub3.0; GCA_000226075.1): JH137943.1: 1345907-1345970 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from stu-MIR399c

• stu-MIR399l: JH137943.1: 1337176-1337239 [-]
• stu-MIR399m: JH137943.1: 1343553-1343616 [-]
• stu-MIR399c: JH137943.1: 1345907-1345970 [+]
• stu-MIR399f: JH137943.1: 1348794-1348857 [-]
• stu-MIR399d: JH137943.1: 1350997-1351060 [+]
• stu-MIR399o: JH137943.1: 1355425-1355488 [-]

Database links

• miRBase Tracker:MI0025875

Mature sequence stu-miR399c-5p

• Accession: MIMAT0030966
• Sequence: 1 - gggcuacucucuauuggcaug - 21
• Evidence: experimental; Illumina [1]

Mature sequence stu-miR399c-3p

• Accession: MIMAT0031229
• Sequence: 44 - ugccaaaggagagcugcccug - 64
• Evidence: experimental; Illumina [1]

References

1. PMID:23437348 "Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing" Zhang R, Marshall D, Bryan GJ, Hornyik C PLoS One. 8:e57233(2013).