Stem-loop sequence stu-MIR399b

Accession

MI0025874 (change log)

Description

Solanum tuberosum miR399b stem-loop

Gene family

MIPF0000015; MIR399

Literature search

4 open access papers mention stu-MIR399b
(14 sentences)

Stem-loop

   --    ua      a        -  -    ua 
5'   gggc  cucucu uuggcaug ca cuua  u
     ||||  |||||| |||||||| || ||||   
3'   cccg  gagagg aaccguac gu gaau  a
   gu    uc      a        a  c    uu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SolTub3.0; GCA_000226075.1): JH137943.1: 1330373-1330436 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from stu-MIR399b

• stu-MIR399a: JH137943.1: 1321860-1321923 [+]
• stu-MIR399k: JH137943.1: 1326953-1327016 [-]
• stu-MIR399b: JH137943.1: 1330373-1330436 [+]
• stu-MIR399n: JH137943.1: 1332990-1333053 [-]
• stu-MIR399l: JH137943.1: 1337176-1337239 [-]

Database links

• miRBase Tracker:MI0025874

Mature sequence stu-miR399b-5p

• Accession: MIMAT0030965
• Sequence: 1 - gggcuacucucuauuggcaug - 21
• Evidence: experimental; Illumina [1]

Mature sequence stu-miR399b-3p

• Accession: MIMAT0031228
• Sequence: 44 - ugccaaaggagagcugcccug - 64
• Evidence: experimental; Illumina [1]

References

1. PMID:23437348 "Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing" Zhang R, Marshall D, Bryan GJ, Hornyik C PLoS One. 8:e57233(2013).