Stem-loop sequence stu-MIR6149

Accession

MI0025872 (change log)

Description

Solanum tuberosum miR6149 stem-loop

Literature search

2 open access papers mention stu-MIR6149
(3 sentences)

Stem-loop

   --     -   c          u       uuuu 
5'   uugca aca accugaaucg caaauau    u
     ||||| ||| |||||||||| |||||||     
3'   aacgu ugu uggacuuagu guuuaua    a
   ca     a   u          u       uaua 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SolTub3.0; GCA_000226075.1): JH137942.1: 10809-10875 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025872

Mature sequence stu-miR6149-5p

• Accession: MIMAT0030963
• Sequence: 1 - uugcaacacaccugaaucguc - 21
• Evidence: experimental; Illumina [1]

Mature sequence stu-miR6149-3p

• Accession: MIMAT0031226
• Sequence: 46 - ugauucagguuuguaugcaaac - 67
• Evidence: experimental; Illumina [1]

References

1. PMID:23437348 "Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing" Zhang R, Marshall D, Bryan GJ, Hornyik C PLoS One. 8:e57233(2013).