Stem-loop sequence stu-MIR8007b

Accession

MI0025820 (change log)

Description

Solanum tuberosum miR8007b stem-loop

Gene family

MIPF0001839; MIR8007

Literature search

2 open access papers mention stu-MIR8007b
(2 sentences)

Stem-loop

   --     ac        aa        u       a  c  uc        ua     -     -ac      uuaau     gug   uu    --c     guacuu      u 
5'   augug  acuuuuug  uuucgaga ucaaaca gu ua  uuugaccg  aauuu uucau   aucuuu     auuuu   uug  guga   uuaua      uuuaug a
     |||||  ||||||||  |||||||| ||||||| || ||  ||||||||  ||||| |||||   ||||||     |||||   |||  ||||   |||||      |||||| g
3'   uacac  ugaaaagu  aaagcucu aguuugu ca au  aaacuggc  uuaaa gggua   uagaaa     uaaaa   aac  uacu   aauau      aaauau u
   aa     ca        aa        c       -  a  uc        ua     u     cau      ----u     --a   uu    uua     ----au      u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SolTub3.0; GCA_000226075.1): JH138003.1: 403573-403790 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025820

Mature sequence stu-miR8007b-5p

• Accession: MIMAT0030911
• Sequence: 1 - augugacacuuuuugaauuucgag - 24
• Evidence: experimental; Illumina [1]

Mature sequence stu-miR8007b-3p

• Accession: MIMAT0031197
• Sequence: 195 - cgaaaaaugaaaaguaccacauaa - 218
• Evidence: experimental; Illumina [1]

References

1. PMID:23437348 "Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing" Zhang R, Marshall D, Bryan GJ, Hornyik C PLoS One. 8:e57233(2013).