Stem-loop mtr-MIR2592br

Accession

MI0025236

Description

Medicago truncatula mtr-MIR2592br precursor miRNA

Gene family

MIPF0000815; MIR2592

Literature search

1 open access papers mention mtr-MIR2592br
(2 sentences)

Sequence

aauucaaacuugccaaacGACUAGGACUCAAGUAUUUCGcucggcauucauguuuuuccuuugaaaagauuaaauucuuguuaggcugguuuagaugaagguauuaagugucaaggaaugaaccucauuucguuggcacuugaauaccaucaucuaaagcaagguuaauaaaaaauuuauucuuucaaaggaaaacaugaaugccgggggAAAUGCUUGAGUCCUGUUGUUugacaaguuugaauu
((((((((((((.((((((((.((((((((((((((((.(((((((((((((((((.(((((((((.((.((((((.(((((((.(((.(((((((((.((((((((((((((((((((((...))))))).)))))))))).))))).))))))))).).)).)))))))..)))))).)))))))))))))))))))))))))))).)))))))))))))))))))))))).))))))))))))

Structure

            c        U                G                 u         a  u      -c       g  - g         a     -          -       a 
aauucaaacuug caaacGAC AGGACUCAAGUAUUUC cucggcauucauguuuu ccuuugaaa ga uaaauu  uuguuag cu g uuuagauga gguau uaagugucaa ggaauga  
|||||||||||| |||||||| |||||||||||||||| ||||||||||||||||| ||||||||| || ||||||  ||||||| || | ||||||||| ||||| |||||||||| ||||||| c
uuaaguuugaac guUUGUUG UCCUGAGUUCGUAAAg gggccguaaguacaaaa ggaaacuuu cu auuuaa  aauaauu ga c aaaucuacu ccaua guucacgguu cuuuacu  
            a        -                g                 -         -  u      aa       g  a g         a     a          g       c 

Annotation confidence Not enough data

Genome context

chr2: 15307805-15308050 [+]

Mature mtr-miR2592br-5p

• Accession: MIMAT0030013
• Description: Medicago truncatula mtr-miR2592br-5p mature miRNA
• Sequence: 19 - GACUAGGACUCAAGUAUUUCG - 39
• Evidence: experimental ; Illumina [1]

Mature mtr-miR2592br-3p

• Accession: MIMAT0030014
• Description: Medicago truncatula mtr-miR2592br-3p mature miRNA
• Sequence: 211 - AAAUGCUUGAGUCCUGUUGUU - 231
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23572382
   microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
   "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
   "Planta (2013) 238:91-105