Stem-loop sequence mtr-MIR2592bp

Accession

MI0025234 (change log)

Description

Medicago truncatula miR2592bp stem-loop

Gene family

MIPF0000815; MIR2592

Literature search

1 open access papers mention mtr-MIR2592bp
(2 sentences)

Stem-loop

   aauau   -    -acaa      u    c            c          u              uaaca              u     a  aa     gguauaaacgu 
5'      gag uguu     aaugcu gagu cuguuguuuggc aguuugaauu accccauucagagg     aauuguuguaguug aaggu ca  cguuc           c
        ||| ||||     |||||| |||| |||||||||||| |||||||||| ||||||||||||||     |||||||||||||| ||||| ||  |||||            
3'      uuc acga     uuacga cuca gacggcaaauug ucaaacuuaa ugggguaaguuucc     uuaacaacgucaac uucca gu  guaag           c
   --aag   u    guagc      c    a            u          -              uucug              c     c  aa     gaacuagaaaa 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr5: 934556-934780 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025234

Mature sequence mtr-miR2592bp-5p

• Accession: MIMAT0030009
• Sequence: 16 - aaaugcuugaguccuguuguu - 36
• Evidence: experimental; Illumina [1]

Mature sequence mtr-miR2592bp-3p

• Accession: MIMAT0030010
• Sequence: 192 - cggcagaacuccagcauucga - 212
• Evidence: experimental; Illumina [1]

References

1. PMID:23572382 "microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula" Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N Planta. 238:91-105(2013).