Stem-loop osa-MIR7692

Accession

MI0025199

Description

Oryza sativa osa-MIR7692 precursor miRNA

Sequence

160 reads, 108 reads per million, 2 experiments

cguccaaacaaguccuccaaauuaauuauuuggguuaauauaguucuugGAUCCAAAAAAGUGCCACGUGAGCaugccaagucauccucacaugcagcgguaugaaugaaaugaccauucuacccuuauauaccaccuagaaaagaaagaaaaaaaagaagauaaauguuuucacacguguauguucguuuuagaauugucacuuacgauuguugcuggccuguuauuuuuuucuguuuguguuuuuucuuucuuuuuuauaugguauauaaagguagaauggucauuucauucauaccgcuacaugcgaggaUGACUUGGCAUGCUUACGUGGCACuuuuugugggucuaaggacuauauuaacccaaaugauuaauuuggaugacuuguuuggucg
((.(((((((((((.((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((.((((.(((((((((((((((((((((((((((((.((((((((((..((((((((((((((((((..((((((....))))))....(((...((((......))))...))).(((((............................)))))))))))))))))))))))..)))))))))).))))))))))))))))))))))))))))).)))).)))))))))))))))))))))))))))))))))).)))))))))))))))))))))))))))))))))))))))).))))))))))).))

Structure

  u           c                                        -                                  a    c                             c          cc                  -----------------aagaagauaaauguuuucacac   uau    gu 
cg ccaaacaaguc uccaaauuaauuauuuggguuaauauaguucuugGAUCCA AAAAAGUGCCACGUGAGCaugccaagucauccuc caug agcgguaugaaugaaaugaccauucuacc uuauauacca  uagaaaagaaagaaaaaa                                       gug   guuc  u
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||                                       |||   ||||   
gc gguuuguucag agguuuaauuaguaaacccaauuauaucaggaaucugggu uuuuuCACGGUGCAUUCGUACGGUUCAGUaggag guac ucgccauacuuacuuuacugguaagaugg aauauauggu  auuuuuucuuucuuuuuu                                       cac   uaag  u
  u           u                                        g                                  c    a                             a          au                  guguuugucuuuuuuuauuguccggucguuguuagcauu   ugu    au 

Annotation confidence Not enough data

Genome context

Chr1: 26250161-26250558 [+]

Mature osa-miR7692-5p

• Accession: MIMAT0029955
• Description: Oryza sativa osa-miR7692-5p mature miRNA
• Sequence: 50 - GAUCCAAAAAAGUGCCACGUGAGC - 73
• Evidence: experimental ; 454 [1]

Mature osa-miR7692-3p

• Accession: MIMAT0029956
• Description: Oryza sativa osa-miR7692-3p mature miRNA
• Sequence: 314 - UGACUUGGCAUGCUUACGUGGCAC - 337
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 23627500
   Identification of a novel microRNA (miRNA) from rice that targets an alternatively spliced transcript of the Nramp6 (Natural resistance-associated macrophage protein 6) gene involved in pathogen resistance
   "Campo S, Peris-Peris C, Sire C, Moreno AB, Donaire L, Zytnicki M, Notredame C, Llave C, San Segundo B"
   "New Phytol (2013) 199:212-227