Stem-loop sequence hsa-mir-6511b-2

Accession

MI0023431 (change log)

Symbol

HGNC:MIR6511B2

Description

Homo sapiens miR-6511b-2 stem-loop

Gene family

MIPF0001382; mir-6511

Literature search

1 open access papers mention hsa-mir-6511b-2
(1 sentences)

Stem-loop

   ggggc             u   - c   ca    agag 
5'      cugcaggcagaag ggg g uga  gggc    g
        ||||||||||||| ||| | |||  ||||     
3'      gacguccgucuuc ccc c acu  cccg    g
   -----             -   a c   cc    cguu 

Deep sequencing

2244 reads, 6.2 reads per million, 129 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr16: 15134075-15134145 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000422440 ; NTAN1-009; exon 1

  OTTHUMT00000422435 ; NTAN1-003; intron 3

  OTTHUMT00000422437 ; NTAN1-008; intron 3

  OTTHUMT00000422438 ; NTAN1-006; intron 5

  OTTHUMT00000422436 ; NTAN1-002; intron 6

  OTTHUMT00000252089 ; NTAN1-001; intron 7

  OTTHUMT00000422439 ; NTAN1-007; intron 7

  ENST00000570292 ; NTAN1-009; exon 1

  ENST00000566542 ; NTAN1-003; intron 3

  ENST00000568738 ; NTAN1-008; intron 3

  ENST00000568320 ; NTAN1-006; intron 5

  ENST00000565187 ; NTAN1-002; intron 6

  ENST00000287706 ; NTAN1-001; intron 7

  ENST00000566419 ; NTAN1-007; intron 7

  antisense

  OTTHUMT00000422421 ; PDXDC1-016; intron 16

  ENST00000535621 ; PDXDC1-016; intron 16

Database links

• HGNC:MIR6511B2
• RNAcentral:URS000079AEF9_9606
• miRBase Tracker:MI0023431

Mature sequence hsa-miR-6511b-5p

• Accession: MIMAT0025847
• Sequence: 6 - cugcaggcagaaguggggcugaca - 29
• Deep sequencing: 976 reads, 69 experiments
• Evidence: experimental; meta-analysis [1]
• Database links:
  • RNAcentral:URS0000759A05_9606
• Predicted targets:
  • TargetScanVert:hsa-miR-6511b-5p
  • miRDB:hsa-miR-6511b-5p

Mature sequence hsa-miR-6511b-3p

• Accession: MIMAT0025848
• Sequence: 48 - ccucaccaccccuucugccugca - 70
• Deep sequencing: 4212 reads, 147 experiments
• Evidence: experimental; meta-analysis [1]
• Database links:
  • RNAcentral:URS0000759CCE_9606
• Predicted targets:
  • TargetScanVert:hsa-miR-6511b-3p
  • miRDB:hsa-miR-6511b-3p

References

1. PMID:22955976 "Discovery of hundreds of mirtrons in mouse and human small RNA data" Ladewig E, Okamura K, Flynt AS, Westholm JO, Lai EC Genome Res. 22:1634-1645(2012).