Stem-loop sequence mdm-MIR395d

Accession

MI0023087 (change log)

Description

Malus domestica miR395d stem-loop

Gene family

MIPF0000016; MIR395

Literature search

5 open access papers mention mdm-MIR395d
(49 sentences)

Stem-loop

       g   u c  ua         ug c      auugggaggugagagaucaaucguggauaugguuuu 
5' auca gug c cc  gaguucccu  a cacuuc                                    c
   |||| ||| | ||  |||||||||  | ||||||                                     
3' uagu uac g gg  cucaagggg  u gugaag                                    g
       a   u u  uc         gu u      ucauccuuauguauccuccucaccuccuguuaacaa 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates: MDC003846.250: 17630-17771 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mdm-MIR395d

• mdm-MIR395b: MDC003846.250: 18712-18848 [+]
• mdm-MIR395d: MDC003846.250: 17630-17771 [-]
• mdm-MIR395j: MDC003846.250: 12355-12467 [+]
• mdm-MIR395h: MDC003846.250: 12137-12240 [+]
• mdm-MIR395g: MDC003846.250: 11880-12031 [+]
• mdm-MIR395k: MDC003846.250: 8270-8437 [-]

Database links

• miRBase Tracker:MI0023087

Mature sequence mdm-miR395d-5p

• Accession: MIMAT0037469
• Sequence: 18 - guucccuugaccacuucauug - 38
• Evidence: experimental; Illumina [2]

Mature sequence mdm-miR395d-3p

• Accession: MIMAT0025983
• Sequence: 107 - cugaaguguuugggggaacuc - 127
• Evidence: experimental; miRNAseq [1]

References

1. PMID:22704043 "Apple miRNAs and tasiRNAs with novel regulatory networks" Xia R, Zhu H, An YQ, Beers EP, Liu Z Genome Biol. 13:R47(2012).
2. "Identification of apple miRNAs and their potential role in fire blight resistance" Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I Trees Genet Genomes. 11:812(2014).