Stem-loop sequence hsa-mir-6748

Accession

MI0022593 (change log)

Symbol

HGNC:MIR6748

Description

Homo sapiens miR-6748 stem-loop

Literature search

1 open access papers mention hsa-mir-6748
(1 sentences)

Stem-loop

   uggug      u  g a    u     ugaaau  uc 
5'      uguggg gg a ggac ggauu      gg  c
        |||||| || | |||| |||||      ||  c
3'      acaucc cu u ccug ccuag      cc  a
   ----g      u  g c    u     --cagu  uc 

Deep sequencing

92 reads, 0 reads per million, 41 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr11: 62789815-62789885 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from hsa-mir-6748

• hsa-mir-6748: chr11: 62789815-62789885 [+]
• hsa-mir-6514: chr11: 62792702-62792771 [-]

Database links

• HGNC:MIR6748
• miRBase Tracker:MI0022593

Mature sequence hsa-miR-6748-5p

• Accession: MIMAT0027396
• Sequence: 6 - ugugggugggaaggacuggauu - 27
• Deep sequencing: 66 reads, 33 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:hsa-miR-6748-5p
  • miRDB:hsa-miR-6748-5p

Mature sequence hsa-miR-6748-3p

• Accession: MIMAT0027397
• Sequence: 51 - uccugucccugucuccuacag - 71
• Deep sequencing: 10 reads, 8 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:hsa-miR-6748-3p
  • miRDB:hsa-miR-6748-3p

References

1. PMID:22955976 "Discovery of hundreds of mirtrons in mouse and human small RNA data" Ladewig E, Okamura K, Flynt AS, Westholm JO, Lai EC Genome Res. 22:1634-1645(2012).