Stem-loop sequence hsa-mir-892c

Accession

MI0022560 (change log)

Symbol

HGNC:MIR892C

Description

Homo sapiens miR-892c stem-loop

Gene family

MIPF0000386; mir-743

Literature search

3 open access papers mention hsa-mir-892c
(4 sentences)

Stem-loop

   --   ag   c             ugc    c  uuag 
5'   ggc  ugc cuauucagaaagg   cagu ac    a
     |||  ||| |||||||||||||   |||| ||    u
3'   ucg  aug ggugagucuuucc   guca ug    u
   au   gg   a             uuu    c  uaca 

Deep sequencing

104 reads, 2.17 reads per million, 46 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCh38; GCA_000001405.15): chrX: 145992750-145992826 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from hsa-mir-892c

• hsa-mir-891b: chrX: 146001053-146001131 [-]
• hsa-mir-892b: chrX: 145997198-145997274 [-]
• hsa-mir-892a: chrX: 145996669-145996743 [-]
• hsa-mir-888: chrX: 145994784-145994860 [-]
• hsa-mir-890: chrX: 145994275-145994351 [-]
• hsa-mir-892c: chrX: 145992750-145992826 [-]

Database links

• HGNC:MIR892C
• miRBase Tracker:MI0022560

Mature sequence hsa-miR-892c-5p

• Accession: MIMAT0025857
• Sequence: 11 - uauucagaaaggugccaguca - 31
• Deep sequencing: 27 reads, 16 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:hsa-miR-892c-5p
  • miRDB:hsa-miR-892c-5p

Mature sequence hsa-miR-892c-3p

• Accession: MIMAT0025858
• Sequence: 46 - cacuguuuccuuucugagugga - 67
• Deep sequencing: 25 reads, 15 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:hsa-miR-892c-3p
  • miRDB:hsa-miR-892c-3p

References

1. PMID:22313525 "Deep sequencing analysis of small non-coding RNAs reveals the diversity of microRNAs and piRNAs in the human epididymis" Li Y, Wang HY, Wan FC, Liu FJ, Liu J, Zhang N, Jin SH, Li JY Gene. 497:330-335(2012).