Stem-loop sequence hsa-mir-6515

Accession

MI0022227 (change log)

Symbol

HGNC:MIR6515

Description

Homo sapiens miR-6515 stem-loop

Literature search

2 open access papers mention hsa-mir-6515
(6 sentences)

Stem-loop

   cau   a     -ug     c   u   c 
5'    ugg gggug   gaaga auc ggg c
      ||| |||||   ||||| ||| |||  
3'    acc cccau   cuucu uag cuc a
   --g   c     cua     c   u   a 

Deep sequencing

633 reads, 4.03 reads per million, 124 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr19: 12940484-12940540 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000451541 ; CTD-2265O21.3-001; intron 2

  ENST00000588469 ; CTD-2265O21.3-001; intron 2

  antisense

  OTTHUMT00000451500 ; HOOK2-024; intron 1

  OTTHUMT00000451534 ; RTBDN-004; intron 2

  OTTHUMT00000451513 ; RTBDN-003; intron 2

  OTTHUMT00000451535 ; RTBDN-010; intron 2

  OTTHUMT00000451536 ; RTBDN-009; intron 2

  OTTHUMT00000451729 ; RTBDN-011; intron 2

  OTTHUMT00000451537 ; RTBDN-005; intron 2

  OTTHUMT00000451538 ; RTBDN-008; intron 2

  OTTHUMT00000451730 ; RTBDN-012; intron 2

  OTTHUMT00000451539 ; RTBDN-007; intron 2

  OTTHUMT00000451511 ; RTBDN-001; intron 3

  OTTHUMT00000451512 ; RTBDN-002; intron 3

  OTTHUMT00000451540 ; RTBDN-006; intron 3

  ENST00000589765 ; HOOK2-024; intron 1

  ENST00000592204 ; RTBDN-004; intron 2

  ENST00000458671 ; RTBDN-003; intron 2

  ENST00000586969 ; RTBDN-010; intron 2

  ENST00000589681 ; RTBDN-009; intron 2

  ENST00000589808 ; RTBDN-011; intron 2

  ENST00000590404 ; RTBDN-005; intron 2

  ENST00000585384 ; RTBDN-008; intron 2

  ENST00000589567 ; RTBDN-012; intron 2

  ENST00000591512 ; RTBDN-007; intron 2

  ENST00000589272 ; RTBDN-001; intron 3

  ENST00000322912 ; RTBDN-002; intron 3

  ENST00000587549 ; RTBDN-006; intron 3

  ENST00000393233 ; RTBDN-201; intron 3

Database links

• HGNC:MIR6515
• RNAcentral:URS000075CDB4_9606
• miRBase Tracker:MI0022227

Mature sequence hsa-miR-6515-5p

• Accession: MIMAT0025486
• Sequence: 3 - uuggaggguguggaagacauc - 23
• Deep sequencing: 354 reads, 97 experiments
• Evidence: experimental; Illumina [1-2]
• Database links:
  • RNAcentral:URS000075EAB6_9606
• Predicted targets:
  • TargetScanVert:hsa-miR-6515-5p
  • miRDB:hsa-miR-6515-5p

Mature sequence hsa-miR-6515-3p

• Accession: MIMAT0025487
• Sequence: 38 - ucucuucaucuaccccccag - 57
• Deep sequencing: 67 reads, 27 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:hsa-miR-6515-3p
  • miRDB:hsa-miR-6515-3p

References

1. PMID:21807764 "Deep sequencing of small RNAs from human skin reveals major alterations in the psoriasis miRNAome" Joyce CE, Zhou X, Xia J, Ryan C, Thrash B, Menter A, Zhang W, Bowcock AM Hum Mol Genet. 20:4025-4040(2011).
2. PMID:22313525 "Deep sequencing analysis of small non-coding RNAs reveals the diversity of microRNAs and piRNAs in the human epididymis" Li Y, Wang HY, Wan FC, Liu FJ, Liu J, Zhang N, Jin SH, Li JY Gene. 497:330-335(2012).