Stem-loop sequence hsa-mir-6069

Accession

MI0020346 (change log)

Symbol

HGNC:MIR6069

Description

Homo sapiens miR-6069 stem-loop

Literature search

3 open access papers mention hsa-mir-6069
(13 sentences)

Stem-loop

   ---   u    -      cuag     g ug   -     c 
5'    ugg gacc ccuggg    ggccu c  ccc ccugc c
      ||| |||| ||||||    ||||| |  ||| ||||| a
3'    acc cugg ggauuc    cuggg g  ggg ggacg g
   gug   -    u      cuca     a gu   a     u 

Deep sequencing

14 reads, 244 reads per million, 9 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr22: 35336721-35336799 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000467276 ; RP1-272J12.1-003; intron 8

  ENST00000448318 ; RP1-272J12.1-003; intron 8

Clustered miRNAs

< 10kb from hsa-mir-6069

• hsa-mir-6069: chr22: 35336721-35336799 [-]
• hsa-mir-3909: chr22: 35335640-35335758 [+]

Database links

• HGNC:MIR6069
• miRBase Tracker:MI0020346

Mature sequence hsa-miR-6069

• Accession: MIMAT0023694
• Sequence: 12 - gggcuagggccugcugccccc - 32
• Deep sequencing: 1 reads, 1 experiments
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • TargetScanVert:hsa-miR-6069
  • miRDB:hsa-miR-6069

References

1. PMID:22282338 "Deep-sequencing of endothelial cells exposed to hypoxia reveals the complexity of known and novel microRNAs" Voellenkle C, Rooij Jv, Guffanti A, Brini E, Fasanaro P, Isaia E, Croft L, David M, Capogrossi MC, Moles A, Felsani A, Martelli F RNA. 18:472-484(2012).